Ramutils
2.3
Contents
Getting Started: RAM Report Data
Serializable data structures
Classifier training, cross validation, and utilities
Event processing
Pipelines and Tasks
Command-line usage
Miscellaneous utilities
Ramutils
Docs
»
Index
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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T
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U
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V
A
add_field() (in module ramutils.events)
add_list_phase_info() (in module ramutils.events)
auc (ramutils.reports.summary.ClassifierSummary attribute)
B
bipolar_pairs (ramutils.reports.summary.SessionSummary attribute)
build_dtype_list() (in module ramutils.events)
build_test_data() (in module ramutils.tasks.events)
build_training_data() (in module ramutils.tasks.events)
bytes_to_str() (in module ramutils.utils)
C
calculate_repetition_ratio() (in module ramutils.events)
CatFRSessionSummary (class in ramutils.reports.summary)
center (built-in class)
classifier_activation (ramutils.reports.summary.ClassifierSummary attribute)
ClassifierSummary (class in ramutils.reports.summary)
clean_events() (in module ramutils.events)
coerce_study_pair_to_word_event() (in module ramutils.events)
combine_retrieval_events() (in module ramutils.events)
combine_sessions() (ramutils.reports.summary.FRStimSessionSummary static method)
combine_tag_names() (in module ramutils.utils)
CommandLineError
compute_normalized_powers() (in module ramutils.tasks.powers)
concatenate_events_across_experiments() (in module ramutils.events)
concatenate_events_for_single_experiment() (in module ramutils.events)
confidence_interval_median_classifier_output (ramutils.reports.summary.ClassifierSummary attribute)
correct_fr2_stim_item_identification() (in module ramutils.events)
create() (ramutils.reports.summary.Summary class method)
D
dataframe_to_recarray() (in module ramutils.events)
DataLoadingError
decision (ramutils.reports.summary.PSSessionSummary attribute)
delta_recall() (ramutils.reports.summary.FRStimSessionSummary static method)
E
encode_file() (in module ramutils.utils)
events (ramutils.reports.summary.MathSummary attribute)
(ramutils.reports.summary.SessionSummary attribute)
(ramutils.reports.summary.Summary attribute)
excluded_pairs (ramutils.reports.summary.SessionSummary attribute)
experiment (ramutils.reports.summary.SessionSummary attribute)
ExperimentParameters (class in ramutils.parameters)
extract_event_metadata() (in module ramutils.events)
extract_experiment_from_events() (in module ramutils.events)
extract_experiment_series() (in module ramutils.utils)
extract_lists() (in module ramutils.events)
extract_report_info_from_path() (in module ramutils.utils)
extract_sample_rate_from_eeg() (in module ramutils.events)
extract_sessions() (in module ramutils.events)
extract_stim_information() (in module ramutils.events)
extract_subject() (in module ramutils.events)
extract_subject_montage() (in module ramutils.utils)
F
false_positive_rate (ramutils.reports.summary.ClassifierSummary attribute)
FilePaths (class in ramutils.parameters)
find_free_time_periods() (in module ramutils.events)
find_subjects() (in module ramutils.events)
FRParameters (class in ramutils.parameters)
FRSessionSummary (class in ramutils.reports.summary)
FRStimSessionSummary (class in ramutils.reports.summary)
G
generate_electrode_config() (in module ramutils.tasks.odin)
generate_montage_metadata_table() (in module ramutils.tasks.montage)
generate_pairs_for_classifier() (in module ramutils.tasks.montage)
generate_ramulator_config() (in module ramutils.tasks.odin)
get_all_retrieval_events_mask() (in module ramutils.events)
get_artifact_tstats() (in module ramutils.tasks.montage)
get_baseline_retrieval_mask() (in module ramutils.events)
get_classifier_excluded_leads() (in module ramutils.tasks.montage)
get_completed_sessions() (in module ramutils.utils)
get_encoding_mask() (in module ramutils.events)
get_fr_retrieval_events_mask() (in module ramutils.events)
get_logger() (in module ramutils.log)
get_math_events_mask() (in module ramutils.events)
get_nonstim_events_mask() (in module ramutils.events)
get_pairs() (in module ramutils.tasks.montage)
get_pal_retrieval_events_mask() (in module ramutils.events)
get_partition_masks() (in module ramutils.events)
get_recall_events_mask() (in module ramutils.events)
get_required_columns() (in module ramutils.events)
get_session_mask() (in module ramutils.events)
get_session_str() (in module ramutils.utils)
get_stim_list_mask() (in module ramutils.events)
get_stim_table_event_mask() (in module ramutils.events)
get_time_between_events() (in module ramutils.events)
get_trigger_frequency_mask() (in module ramutils.tasks.powers)
get_used_pair_mask() (in module ramutils.tasks.montage)
get_vocalization_mask() (in module ramutils.events)
get_word_event_mask() (in module ramutils.events)
H
high_tercile_diff_from_mean (ramutils.reports.summary.ClassifierSummary attribute)
I
initialize_empty_event_reccarray() (in module ramutils.events)
initialize_empty_stim_reccarray() (in module ramutils.events)
insert_baseline_retrieval_events() (in module ramutils.events)
insert_baseline_retrieval_events_deprecated() (in module ramutils.events)
insert_baseline_retrieval_events_logan() (in module ramutils.events)
intrusion_events (ramutils.reports.summary.FRSessionSummary attribute)
irt_between_category (ramutils.reports.summary.CatFRSessionSummary attribute)
irt_within_category (ramutils.reports.summary.CatFRSessionSummary attribute)
is_stim_experiment() (in module ramutils.utils)
L
lists() (ramutils.reports.summary.FRStimSessionSummary static method)
load_event_test_data() (in module ramutils.utils)
load_events() (in module ramutils.events)
load_existing_results() (in module ramutils.tasks.misc)
location_summary (ramutils.reports.summary.PSSessionSummary attribute)
lookup_sample_rate() (in module ramutils.events)
low_tercile_diff_from_mean (ramutils.reports.summary.ClassifierSummary attribute)
M
make_aggregated_report() (in module ramutils.pipelines.aggregated_report)
make_ramulator_config() (in module ramutils.pipelines.ramulator_config)
make_report() (in module ramutils.pipelines.report)
make_task() (in module ramutils.tasks)
MathSummary (class in ramutils.reports.summary)
median_classifier_output (ramutils.reports.summary.ClassifierSummary attribute)
mid_tercile_diff_from_mean (ramutils.reports.summary.ClassifierSummary attribute)
MissingArgumentsError
MissingFileError
mkdir_p() (in module ramutils.utils)
MultistimNotAllowedException
N
n_pairs (ramutils.reports.summary.SessionSummary attribute)
normalize_pal_events() (in module ramutils.events)
normalized_powers (ramutils.reports.summary.SessionSummary attribute)
normalized_powers_plot (ramutils.reports.summary.SessionSummary attribute)
num_correct (ramutils.reports.summary.FRSessionSummary attribute)
(ramutils.reports.summary.MathSummary attribute)
num_extra_list_intrusions (ramutils.reports.summary.FRSessionSummary attribute)
num_lists (ramutils.reports.summary.FRSessionSummary attribute)
(ramutils.reports.summary.MathSummary attribute)
(ramutils.reports.summary.SessionSummary attribute)
num_nonstim_lists() (ramutils.reports.summary.FRStimSessionSummary static method)
num_prior_list_intrusions (ramutils.reports.summary.FRSessionSummary attribute)
num_problems (ramutils.reports.summary.MathSummary attribute)
num_stim_lists() (ramutils.reports.summary.FRStimSessionSummary static method)
num_words (ramutils.reports.summary.FRSessionSummary attribute)
P
PALParameters (class in ramutils.parameters)
partition_events() (in module ramutils.events)
percent_correct (ramutils.reports.summary.MathSummary attribute)
percent_recalled (ramutils.reports.summary.FRSessionSummary attribute)
perform_lolo_cross_validation() (in module ramutils.classifier.cross_validation)
perform_loso_cross_validation() (in module ramutils.classifier.cross_validation)
permuted_auc_values (ramutils.reports.summary.ClassifierSummary attribute)
permuted_lolo_cross_validation() (in module ramutils.classifier.cross_validation)
permuted_loso_cross_validation() (in module ramutils.classifier.cross_validation)
populate() (ramutils.reports.summary.CatFRSessionSummary method)
(ramutils.reports.summary.ClassifierSummary method)
(ramutils.reports.summary.FRSessionSummary method)
(ramutils.reports.summary.FRStimSessionSummary method)
(ramutils.reports.summary.MathSummary method)
(ramutils.reports.summary.PSSessionSummary method)
(ramutils.reports.summary.SessionSummary method)
(ramutils.reports.summary.StimSessionSummary method)
(ramutils.reports.summary.Summary method)
post_hoc_classifier_evaluation() (in module ramutils.tasks.classifier)
post_stim_prob_recall (ramutils.reports.summary.StimSessionSummary attribute)
pre_stim_prob_recall() (ramutils.reports.summary.FRStimSessionSummary static method)
predicted_probabilities (ramutils.reports.summary.ClassifierSummary attribute)
prob_first_recall_by_serialpos() (ramutils.reports.summary.FRStimSessionSummary static method)
prob_recall_by_serialpos() (ramutils.reports.summary.FRStimSessionSummary static method)
prob_stim_by_serialpos() (ramutils.reports.summary.FRStimSessionSummary static method)
problems_per_list (ramutils.reports.summary.MathSummary attribute)
PS5Parameters (class in ramutils.parameters)
PSSessionSummary (class in ramutils.reports.summary)
pvalue (ramutils.reports.summary.ClassifierSummary attribute)
R
RamException
ramutils.classifier.cross_validation (module)
ramutils.classifier.utils (module)
ramutils.constants (module)
ramutils.events (module)
ramutils.exc (module)
ramutils.log (module)
ramutils.parameters (module)
ramutils.reports.summary (module)
ramutils.tasks.classifier (module)
ramutils.tasks.events (module)
ramutils.tasks.misc (module)
ramutils.tasks.montage (module)
ramutils.tasks.odin (module)
ramutils.tasks.powers (module)
ramutils.tasks.summary (module)
ramutils.utils (module)
RamutilsFileHandler (class in ramutils.log)
RamutilsStreamHandler (class in ramutils.log)
raw_events (ramutils.reports.summary.Summary attribute)
raw_repetition_ratios (ramutils.reports.summary.CatFRSessionSummary attribute)
read_index() (in module ramutils.tasks.misc)
recall_test_results() (ramutils.reports.summary.FRStimSessionSummary static method)
recalls_by_list() (ramutils.reports.summary.FRStimSessionSummary static method)
reduce_pairs() (in module ramutils.tasks.montage)
reduce_powers() (in module ramutils.tasks.powers)
regions (ramutils.reports.summary.ClassifierSummary attribute)
reindent_json() (in module ramutils.utils)
reload_classifier() (in module ramutils.classifier.utils)
reload_used_classifiers() (in module ramutils.tasks.classifier)
remove_bad_events() (in module ramutils.events)
remove_incomplete_lists() (in module ramutils.events)
remove_intrusions() (in module ramutils.events)
remove_negative_offsets() (in module ramutils.events)
remove_nonresponses() (in module ramutils.events)
remove_practice_lists() (in module ramutils.events)
remove_session_number_offsets() (in module ramutils.events)
remove_voice_detection() (in module ramutils.events)
rename_correct_to_recalled() (in module ramutils.events)
repetition_ratios (ramutils.reports.summary.CatFRSessionSummary attribute)
RetrievalBaselineError
S
safe_divide() (in module ramutils.utils)
sanitize_comma_sep_list() (in module ramutils.utils)
save_all_output() (in module ramutils.tasks.misc)
save_array_to_hdf5() (in module ramutils.utils)
save_classifier_weights_plot() (in module ramutils.classifier.utils)
select_all_retrieval_events() (in module ramutils.events)
select_baseline_retrieval_events() (in module ramutils.events)
select_column_subset() (in module ramutils.events)
select_encoding_events() (in module ramutils.events)
select_math_events() (in module ramutils.events)
select_retrieval_events() (in module ramutils.events)
select_session_events() (in module ramutils.events)
select_stim_table_events() (in module ramutils.events)
select_vocalization_events() (in module ramutils.events)
select_word_events() (in module ramutils.events)
separate_stim_events() (in module ramutils.events)
serialize_classifier() (in module ramutils.tasks.classifier)
serialpos_probabilities() (ramutils.reports.summary.FRSessionSummary static method)
session_datetime (ramutils.reports.summary.SessionSummary attribute)
session_length (ramutils.reports.summary.SessionSummary attribute)
session_number (ramutils.reports.summary.MathSummary attribute)
(ramutils.reports.summary.SessionSummary attribute)
SessionSummary (class in ramutils.reports.summary)
show_log_handlers() (in module ramutils.utils)
stim_columns (ramutils.reports.summary.FRStimSessionSummary attribute)
stim_events_by_list() (ramutils.reports.summary.FRStimSessionSummary static method)
stim_parameters() (ramutils.reports.summary.FRStimSessionSummary static method)
stim_params_by_list() (ramutils.reports.summary.FRStimSessionSummary static method)
StimParameters (class in ramutils.parameters)
StimSessionSummary (class in ramutils.reports.summary)
subject (ramutils.reports.summary.SessionSummary attribute)
(ramutils.reports.summary.StimSessionSummary attribute)
subject_ratio (ramutils.reports.summary.CatFRSessionSummary attribute)
subset_pal_events() (in module ramutils.events)
summarize_classifier() (in module ramutils.tasks.classifier)
summarize_math() (in module ramutils.tasks.summary)
summarize_nonstim_sessions() (in module ramutils.tasks.summary)
summarize_ps_sessions() (in module ramutils.tasks.summary)
summarize_stim_sessions() (in module ramutils.tasks.summary)
Summary (class in ramutils.reports.summary)
T
task() (in module ramutils.tasks)
tempdir() (in module ramutils.utils)
thresholds (ramutils.reports.summary.ClassifierSummary attribute)
timer() (in module ramutils.utils)
to_dataframe() (ramutils.reports.summary.MathSummary method)
(ramutils.reports.summary.SessionSummary method)
TooManyExperimentsError
TooManySessionsError
total_num_correct() (ramutils.reports.summary.MathSummary static method)
total_num_problems() (ramutils.reports.summary.MathSummary static method)
total_percent_correct() (ramutils.reports.summary.MathSummary static method)
total_problems_per_list() (ramutils.reports.summary.MathSummary static method)
touch() (in module ramutils.utils)
train_classifier() (in module ramutils.classifier.utils)
true_outcomes (ramutils.reports.summary.ClassifierSummary attribute)
true_positive_rate (ramutils.reports.summary.ClassifierSummary attribute)
U
UnableToReloadClassifierException
UnsupportedExperimentError
update_pal_retrieval_events() (in module ramutils.events)
update_recall_outcome_for_retrieval_events() (in module ramutils.events)
update_subject() (in module ramutils.events)
V
validate_single_experiment() (in module ramutils.events)
validate_single_session() (in module ramutils.events)
ValidationError